Thursday, March 30, 2023

UV fluorescence - what causes it?

 I have been intrigued as to how UV (ultra-violet) fluorescence works, so have been doing some research on the internet to find out.  Before I attempt to explain the science, there will be some general information and pretty pictures.First of all, what items fluoresce? You already know about lichens, but there are some common but unexpected things that give results under UV light. Here's one - eggs!

Eggs: left normal light, right UV light


The chemical in eggs shells that fluoresces is called PPIX ( Protoporphyrin IX) which gives eggs their brown colour.  You can see that the bluer egg in the box is not quite as fluorescent. There is a lot of information about fluorescence in eggs here and the diagram explaining the science is further down in this post.
The other commonly occurring chemical that fluoresces is chlorophyll, the green compound found in plants that allows them to photosynthesise (create food from sunlight, carbon dioxide and water).  I now think this is the source of the  unexplained bright red fluorescence in the previous post, shown again below, which was probably algae. 
That stick again!
You may wonder why the glow is a red colour when plants look green.  In fact, plants absorb the red wavelengths and reflect the green light (which is why they look green). When I was cleaning my greenhouse this week, I did wonder why they make greenhouse shading green - it would be better to make it red as the plants want the red light not the green! 
The explanation for the colours under UV involves some science so stop here if you are not curious...

Every atom or molecule has electrons  surrounding it.  Each electron has a certain energy, called its energy level. However, it can absorb energy and become "excited" and jump up to another energy level.  It can't just be any amount of energy though.  It needs to be a precise amount to lift it to the next energy level. Imagine a set of stairs.  To get to the next higher step, you have to step up the precise amount.
UV light has a lot of energy and causes the electron to jump up more than one step.  When it then falls down the steps, it gives out the energy as heat or for its final step down the energy is given out as light - fluorescence. The colour depends on the height of the last step down. Different chemicals have different energy levels (step heights) so fluoresce  a colour specific to that chemical.

 Here is a diagram showing the process for eggs which is from here

A similar diagram for chlorophyll in plants is called the Jablonski diagram - google it if you want to know more. Basically, the last step down is the amount of energy in a red photon, so there is red fluorescence.
As lichens produce many different chemicals as part of their defence against sunlight, predators (slugs and snails) and other lichens encroaching their space, different lichens can glow different colours under UV. Here is one  on a rock by Pattack Falls that glows a beautiful bright blue:
Sphaerophorus globosus: normal light on left, UV on right


Technical note.  The UV torch used had a wavelength of 365nm.




Monday, March 13, 2023

To see a world in a grain of sand...

 As William Blake said, there is a wonderful world to be seen if you look closely at small things. I think this is part of my fascination with lichens - there is always something new to be seen if you look closely, preferably with a hand lens or microscope. And if you have a UV torch, the world becomes even more colourful.

Last month, I had lunch at a restaurant on the Beauly Firth, The Storehouse (I can recommend it!). It was a beautiful sunny calm day.

Beauly Firth shoreline
As always, I had a look for fallen twigs, just in case there were interesting lichens...


It all became much more spectacular under UV light.

The yellow lichen (Xanthoria parietina) fluoresces bright orange under UV.  Different chemicals in the lichen cause the fluorescence.  In this case the chemical is called "parietin" and acts as a sunscreen.  I don't know which came first, the name of the chemical or the name of the lichen. I have no idea what is causing the deep red fluorescence between the 2 orange patches, as there is nothing visible on the bark. The small patch of pale orange to the bottom right is a lichen called Lecidella eleochroma.

The array of grey lichens along the bottom of the branch are more difficult to name but I decided  it was about time I tackled these grey "jam tart" lichens which I have avoided so far.  I picked up another fallen branch by Loch Imrich. Here it is:

I decided to look at the patch of lichens just above 18 on the ruler.

The "jam tarts" I mentioned are the round structures with white margins - just like jam tarts with a jammy middle and a white pastry case. I could see 2 different lichens; on the left, brown jam tarts (apothecia) on a white background  and on the right, frosted jam tarts which looked as if they had icing sugar on them (it's called pruina botanically) with a yellow background. When I looked a bit further along there was a third tiny green lichen, only a few mm across.

 In my quest to find a name for these lichens, I measured them, noted the different colours and tested them by putting tiny drops of chemicals on then looking for any colour changes.  Then armed with a book by Dobson, tried to key them out - with no success! So no names at present. Looking at them  with the UV torch was interesting.

The bright yellow and turquoise patches are where I applied a small amount of chemical, usually abbreviated to K (though it is actually KOH, Potasssium hydroxide).  As none of the lichens looked orange under UV, this ruled out some IDs and I still can't name the lichens. I think I will need some help! But I enjoyed the investigation.